Posts tagged animals
NSF AWARDS CU-BOULDER $5.9 MILLION GRANT FOR ALPINE ECOSYSTEM RESEARCH
Jun 16th
The National Science Foundation has awarded the University of Colorado Boulder a six-year, $5.9 million grant to continue intensive studies of long-term ecological changes in Colorado’s high mountains, both natural and human-caused, over decades and centuries.
Awarded to CU-Boulder’s Institute of Arctic and Alpine Research, the renewal grant will allow faculty and students, including undergraduates, to continue key environmental studies at the Niwot Ridge Long-Term Ecological Research, or LTER, site west of Boulder. The study site, considered extremely sensitive to climate change, is adjacent to CU-Boulder’s Mountain Research Station and encompasses several thousand acres of tundra, talus slopes, glacial lakes and wetlands stretching to the top of the Continental Divide.
The grant is the largest environmental sciences award in CU-Boulder history, said INSTAAR Fellow Mark Williams, principal investigator on the grant. In 2005, NSF awarded CU-Boulder a $4.9 million renewal grant for environmental studies at the Niwot Ridge site. As one of five initial LTER sites selected by NSF in 1980, Niwot Ridge is now one of 25 such sites in North America and the only one located in an alpine environment, said Williams.
“CU-Boulder has a worldwide reputation for monitoring global climate change from Greenland to Antarctica and its impacts on natural ecosystems and human populations,” said Vice Chancellor for Research Stein Sture. “To direct such a key program in our own backyard for the National Science Foundation is crucial from an environmental science standpoint and unique in that it provides a spectacular training ground for our students to work side-by-side with some of the world’s best climate change scientists.”
Recent climate studies have predicted the mountainous areas of the American West will become both hotter and drier in the coming years, and long-term meteorological measurements on Niwot Ridge indicate the alpine climate there has warmed slightly in recent decades, said Williams, also a professor in the geography department. The temperatures are significant because even small changes in alpine ecosystems can cascade down and have negative effects on other ecosystems, he said.
CU-Boulder researchers also have charted a doubling in atmospheric nitrogen deposition on Niwot Ridge in the past several decades — primarily from automobile, agriculture, ranching and industrial activity — that is now adversely affecting some aquatic and terrestrial life on the ridge, said Williams.
In addition, researchers are keeping a close eye on existing populations of the American pika, a potato-sized animal related to rabbits and found in rocky talus slopes as high as 13,000 feet on Niwot Ridge. Of 25 populations of pikas in the Great Basin of Nevada documented between 1898 to 1990, nine had disappeared by 2008, apparently the result of warming temperatures. Pikas in Colorado require deep snowpack during winter that serves to insulate them from extremely cold air temperatures, Williams said.
“Many consider the American pika a ‘sentinel species’ in terms of measuring the effects of climate change,” said Williams. “Niwot Ridge has a cold, short growing season, and the biological activity that occurs there is on the razor’s edge of environmental tolerance.”
Despite a long-term warming and drying trend in mountainous areas of the West, 2011 was a striking anomaly, said Williams. “What we have seen around here is one of the largest and latest snowfall years on record in the high country and extreme dryness accompanied by an inordinate amount of winter wildfires around Boulder, which is only 15 miles as the crow flies from the Niwot Ridge study area. What has happened from Boulder west to the Continental Divide has been a total disconnect in terms of weather.”
“The primary climate driver of the Niwot Ridge site is snow, and the mountains are our water towers,” said Williams. “As the alpine climate changes, one of the biggest impacts on humans will be a change in water resources. Even if we end up with the same amount of precipitation, in the form of less snow and more rain, we are going to end up with less usable water for municipalities.”
There already are some indications that the snowline in the Rocky Mountains is moving upward, which will affect the abundance and distribution of plants and animals and likely shorten the annual ski seasons at resorts throughout the West in the future, he said.
The Niwot Ridge site is a huge benefit to CU-Boulder students, said Williams. “I have five undergraduates working in my chemistry lab this summer. Not only do they get paid, but they learn valuable research skills.” The LTER grant funds research for about 15 CU-Boulder graduate students and 25 to 30 undergraduates annually, Williams said, and there are more than a dozen CU-Boulder faculty members that are co-investigators on the new Niwot Ridge LTER program grant.
CU-Boulder ecology and environmental biology department Professor William Bowman, director of CU-Boulder’s Mountain Research Station for the past 20 years, said the Niwot Ridge site has been gaining momentum in stature from its beginnings by the consistent, high-quality research that has resulted in many publications in top-tier science journals.
More than half of the research on Niwot Ridge is by scientists and students from around the world that are not associated with the LTER program, said Bowman, also an INSTAAR fellow and who leads a team studying how air pollution, including nitrogen deposition, threatens biological and aquatic communities in U.S. national parks. There are currently 12 undergraduates conducting research at the Niwot Ridge site as part of the NSF’s Research Experience for Undergraduates program, said Bowman, who also is mentoring a student researcher at Niwot Ridge from Fairview High School in Boulder.
Plague identified in City of Boulder
Jun 3rd
Boulder, CO – A domestic cat living in the 2500 block of 6th Street has tested positive for plague. Additionally, a dead squirrel found at the intersection of 8th and Maxwell Avenue has tested positive for plague. As a result, the Mapleton Hill neighborhood has been posted with signs listing precautionary measures to avoid plague.
This is the first time plague activity has been confirmed in Boulder County this season, and public health officials want to remind residents about how to protect themselves against plague.
“We want people to understand what steps they should take to protect themselves, their family members, and their pets,” said Boulder County Public Health (BCPH) Environmental Health Division Manager Joe Malinowski. “Because plague is most commonly transmitted by fleas, taking steps to avoid flea exposure will be most helpful in preventing this disease.”
Public health officials recommend the following precautions to reduce the likelihood of being exposed to plague:
· AVOID FLEAS! Protect pets with flea powder, and keep pets on a leash and out of wild rodent habitats.
· STAY OUT of areas that wild rodents inhabit. If you enter areas with wild rodents, wear insect repellent and tuck your pants cuffs into your socks to prevent flea bites.
· AVOID all contact with wild rodents, including squirrels; do not feed or handle them.
· NEVER TOUCH sick or dead animals with your bare hands. Use a long-handled shovel to place dead animals in a garbage bag, and then place the bag in an outdoor garbage can.
· PREVENT rodent infestations around your house. Clear plants and materials away from outside walls, reduce access to food items, and set traps.
· TREAT known rodent sites around your home with flea powder or a suitable insecticide.
Plague occurs naturally in Colorado and is an infectious disease spread by fleas to wild rodents and other small mammals, such as squirrels, rats, prairie dogs, and rabbits. Bubonic plague is the most common form of plague and occurs after a bite from an infected flea. Plague can spread to humans when infected fleas from squirrels, prairie dogs, and other wild rodents bite a human.
Household pets, such as dogs and especially cats, can either get plague or carry infected fleas home to their owners. In rare instances, plague can be transmitted to people from cats sick with plague. “Keeping cats indoors is the best way to protect them from getting plague,” said Malinowski. “In addition, pet owners should discuss with their veterinarians the best way to protect pets from fleas.”
Symptoms of plague infection include high fever, extreme fatigue, and painful swollen lymph nodes (called bubos). If you observe these symptoms in a person or pet, it is important to contact your health care provider or veterinarian immediately. Plague can be treated with antibiotics, but this treatment is most successful when the disease can be diagnosed quickly.
For more information about plague, please visit the BCPH web site at www.BoulderCountyHealth.org, or call the Health Alert Hotline at 303-441-1460.
GUT MICROBES IN HUMANS AND OTHER MAMMALS HEAVILY INFLUENCED BY DIET, SAYS NEW STUDY C U Boulder
May 20th
You are what you eat whether you’re a lion, a giraffe or a human — at least in terms of the bacteria in your gut.
A new study led by the Washington University School of Medicine and involving the University of Colorado Boulder shows gut microbial communities in humans and in a wildly diverse collection of mammals carry out core physiological functions that are heavily influenced by whether they are carnivores, herbivores or omnivores.
The researchers sequenced intestinal microbes in stool samples from 33 mammalian species living in the wild or in zoos in St. Louis and San Diego. In addition to identifying the bacterial species living in the mammalian intestines, they characterized the pool of genes present in each microbial community and their related functions, said senior study author Dr. Jeffrey Gordon of the Washington University School of Medicine in St. Louis.
CU-Boulder professor and study co-author Rob Knight said despite the wide variation of mammals selected for the study, the different gut microbial communities share a set of standard metabolic functions common to all species that play a key role in digestion and immune health. Understanding the variation in human microbial intestine communities holds promise for future clinical research, said Knight, a faculty member in the chemistry and biochemistry department and the computer science department.
A paper on the subject was published in the May 20 issue of Science. Other co-authors on the study included CU-Boulder’s Justin Kuczynski, Dan Knights, Jose Clemente and Antonio Gonzalez, Washington University School of Medicine’s Brian Muegge and Luigi Fontana, and Bernard Henrissat of the Archictecture et Fonction des Macromolecules Biologiques in Marseille, France.
“This was the first time we were able to relate the microbial community members to the specific metabolic functions that were being performed,” said Knight, who also is a Howard Hughes Medical Institute Early Career Scientist. “This is surprising because even members of the same bacterial species can have genomes that are up to 40 percent different in terms of gene content.”
The team extracted DNA from the mammals and humans and used powerful computer methods to sort gene fragments and match them to the DNA of known organisms.
While there was considerable variation of bacterial gut communities between animals, the study showed many of the same microbial genes were found in all of the digestive tracts, with differences in their relative abundance dependent on whether they were meat-eaters, vegetarians or omnivores. Among the mammals whose fecal material was used to sequence gut bacteria microbes included giraffe, bighorn sheep, gazelle, kangaroo, hyena, lion, polar bear, elephant, gorilla, baboon, black bear and squirrel.
The team also showed how diet influences microbial communities in the human gut by sampling 18 lean people who purposely had cut their caloric intake by 25 percent or more using many different dietary strategies. The researchers found that the functions of gut microbes varied according to how much protein the individuals ate, and the bacterial species varied according to how much fiber was consumed.
In a related 2009 study led by CU-Boulder’s Knight, researchers developed the first atlas of microbial diversity across the human body, charting wide variations in microbe populations from the forehead and feet to noses and navels of individuals. One goal of human bacterial studies is to find out what is normal for healthy people, which should provide a baseline for studies looking at human disease states, said Knight, who also is a fellow at CU’s Colorado Initiative for Molecular Biotechnology.
“If we can better understand this microbial variation, we may be able to begin searching for genetic biomarkers for disease,” said Knight. It might someday be possible to identify sites on the human body, including the gut, that would be amenable to microbial community transplants with either natural or engineered microbial systems that would be beneficial to the health of the host, he said.
“Because the human microbiome is much more variable than the human genome, and because it also is much easier to modify, it provides a much more logical starting point for personalized medicine,” he said.
The latest findings emphasize the need to sample humans across the globe with a variety of extreme lifestyles and diets, including hunter-gatherer groups, said the researchers. Such studies could provide insight into the limits of gut bacteria variation and the possibility that human microbes co-evolved with human bodies and cultures, shaping our physiological differences and environmental adaptations.
Members of Knight’s lab and their many collaborators are studying how the human microbiome — all of a person’s hereditary information — is assembled in different people and how it varies in conditions such as obesity, malnutrition and Crohn’s disease. In addition to financial support from HHMI, Knight also has been supported by National Institutes of Health funds to develop new computational tools to better understand the composition and dynamics of microbial communities.
The Science magazine study was supported by the NIH and the Crohn’s and Colitis Foundation of America.
-CU-